[Bioperl-l] An example to query PMID given GEO accession number?

Tue Jun 9 15:51:35 UTC 2015

Should be feasible via elink, possibly starting with using a search term against GEO, then using the link between GEO and pubmed (via GEO’s UID) to get related PMIDs.

chris

> On Jun 9, 2015, at 9:47 AM, Peng Yu <pengyu.ut at gmail.com> wrote:
> 
> Hi,
> 
> I am looking for an example to to query GEO to get the PMID associated
> with a GEO accession number.
> 
> For example, GSE39684 has the associated PMID 23028701. Can this be
> done with bioperl? Does anybody have an example script for doing so?
> Thanks.
> 
> -- 
> Regards,
> Peng
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at mailman.open-bio.org
> http://mailman.open-bio.org/mailman/listinfo/bioperl-l