[Bioperl-l] New to BioPerl ... part II

[Francisco J. Ossandón]

Hello Olivier,
This week I made a clean install of ActivePerl on a virtual machine to look
for the problems that were not appearing on my Strawberry Perl machine. I
found several bugs and pushed the fixes to GitHub
(https://github.com/bioperl/bioperl-live/tree/v1.6.x), so they will be
incorporated in next release. Also I've updated the BioPerl wiki section
regarding the manual installation in Windows
(http://www.bioperl.org/wiki/Installing_BioPerl_on_Windows#Installation_usin
g_CPAN_or_manual_installation) for ActivePerl. If you find some free time
and are willing to do it, it would be great if you can download BioPerl
directly from the first link and check if the instructions on the second
link let you install it properly.

Cheers,

Francisco J. Ossandon

-----Mensaje original-----
De: bioperl-l-bounces at lists.open-bio.org
[mailto:bioperl-l-bounces at lists.open-bio.org] En nombre de Hilmar Lapp
Enviado el: lunes, 28 de abril de 2014 9:07
Para: Olivier BUHARD
CC: BioPerl List; Francisco J. Ossandón
Asunto: Re: [Bioperl-l] New to BioPerl ... part II

Hi Olivier,

That's great to hear it works on Ubuntu! I wish I had the time figuring out
what the problems are on Windows, but I'm afraid I don't.

  -hilmar


On Fri, Apr 25, 2014 at 10:01 AM, Olivier BUHARD
<Olivier.Buhard at inserm.fr>wrote:

> Hi Francisco and Hilmar,
>
> I forgot to give some news... Finally, it works fine on my Ubuntu (12.04)
> virtual box. I successfully installed all the stuff I need (even with a
lot
> of warnings and errors) and ran the load_seqdatabase.pl with the
> trunctated version of gbpri1.seq I used to work with for those tests. I
now
> have to populate my bioSQL db with GenBank data for human gene sequences.
I
> think I will keep it all working with Ubuntu as I don't have time to deal
> with all the work it require starting again under Windows...
>
> Once I'll be done with the database, I will have to crawl in it to find
> microsatellite sequences and fiter then regarding their features and
> annotations (exon, intron, UTRs, etc etc...). If somebody knows it already
> been coded in Perl, I'm very interested!
>
> Thanks again for the help you brougth.
>
> Best regards
>
> Olivier
>