[Bioperl-l] Whither Bio::FeatureIO?

George Hartzell hartzell at alerce.com
Sun Aug 31 04:24:10 UTC 2014


Fields, Christopher J writes:
 > Just a quick update on this: I released a separate Bio::FeatureIO
 > release to CPAN that represents the code split out from the core
 > modules: 
 > 
 >    https://metacpan.org/pod/Bio::FeatureIO
 > 
 > I had to do some cleanup to get code to work and tests passing with
 > some sanity.  A *lot* of things were not passing tests when we
 > moved this over. 
 > 
 > This should represent what was last working with Chado though.
 > However, I haven’t officially announced anything yet b/c I would
 > like to shake bugs out of it. Can either of you try this out on a
 > Chado run to make sure everything is up to snuff (or at least point
 > out issues)?  Time depending, I would like to get something running
 > on (for instance) Travis-CI, maybe including some optional
 > Chado-related stuff.  This would also help so that we can work on
 > merging what has been done on master so that these pass the same
 > tests. 

I can't do anything until Tuesday, but will be happy to run it through
the standard Chado build process when I get back to work.

Thanks for digging into it.

g.



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