[Bioperl-l] One letter protein sequence to three letters
Fields, Christopher J
cjfields at illinois.edu
Wed Mar 27 03:13:19 UTC 2013
You are correct. Quotes should be unnecessary in this case, percent identities are calculated I believe from the midline.
chris
On Mar 26, 2013, at 9:50 PM, "Smithies, Russell" <Russell.Smithies at agresearch.co.nz> wrote:
> Not 100% sure but is the first one going to do a string compare rather than a numeric compare?
> Or is there a chance that $identity is going to contain a string rather than a float?
>
> I could be completely wrong of course ...
>
> --Russell
> --
>
>
> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Alexey Morozov
> Sent: Wednesday, 27 March 2013 3:34 p.m.
> To: Bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] Fwd: One letter protein sequence to three letters
>
> Well, there is one little thing I don't get. Why is
>
> if ( $hsp->percent_identity >= "$identity" )
>
> any better than
>
> if ( $hsp->percent_identity >= $identity)
>
> Ie what do quotes do?
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
> =======================================================================
> Attention: The information contained in this message and/or attachments
> from AgResearch Limited is intended only for the persons or entities
> to which it is addressed and may contain confidential and/or privileged
> material. Any review, retransmission, dissemination or other use of, or
> taking of any action in reliance upon, this information by persons or
> entities other than the intended recipients is prohibited by AgResearch
> Limited. If you have received this message in error, please notify the
> sender immediately.
> =======================================================================
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
More information about the Bioperl-l
mailing list