[Bioperl-l] using a bioperl module after installing.
Matt
mastarr9 at gmail.com
Fri Mar 15 04:54:49 UTC 2013
I used "fink" to install bioperl. I see that the installation had no
problems and that the Bio/SeqIO module exists in hard
drive/sw/lib/perl5/5.10.0/Bio/SeqIO but I am still unable to actually
make any use of bioperl in a script.
On the bioperl wiki I see that this common error message comes from the
module sometimes not being installed but, in my case, I think that it is
installed but "lost". How can I reinstall or move or change the path to
make bioperl actually work?
Thanks!
Information:
* perl v5.10.0
* Bioperl-pm5.10.0
* OSX 10.6.8
* Goal: To simply use a bioperl module
* The code that gives the error (Using komodo edit):
o #!/usr/bin/perl -w
use strict;
require Bio::SeqiO;
* The error message:
o Can't locate Bio/SeqiO.pm in @INC (@INC contains:
/Library/Perl/Updates/5.10.0
/System/Library/Perl/5.10.0/darwin-thread-multi-2level
/System/Library/Perl/5.10.0
/Library/Perl/5.10.0/darwin-thread-multi-2level
/Library/Perl/5.10.0
/Network/Library/Perl/5.10.0/darwin-thread-multi-2level
/Network/Library/Perl/5.10.0 /Network/Library/Perl
/System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level
/System/Library/Perl/Extras/5.10.0 .) at /Users/Matt/bioperl
test.pl line 3.
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