[Bioperl-l] Q: cpan installation fails for "core.t"

Scott Cain scott at scottcain.net
Thu Jun 6 13:19:18 UTC 2013


Hi Celebron,

Are those the only failures and are you planning on using the assembly modules of BioPerl?  If you aren't planning on using them, yes it's safe to install. 

Scott


Sent from my iPhone

On Jun 5, 2013, at 5:32 AM, Cerebron Emtadrat <emtadrat at yahoo.de> wrote:

> Dear mailing list,
> 
> I'm trying to install Bioperl on a Windows 7 machine running Strawberry Perl. I've started installation using the cpan tool as described on the bioperl.org wiki "Installing BioPerl on Unix". One of the failed tests worries me:
> 
> t/Assembly/core.t ............................ 1/890
> --------------------- WARNING ---------------------
> MSG: Setting end to equal start[1]
> ---------------------------------------------------
> 
> --------------------- WARNING ---------------------
> MSG: Setting end to equal start[1]
> ---------------------------------------------------
> 
> --------------------- WARNING ---------------------
> MSG: Setting end to equal start[1]
> ---------------------------------------------------
> 
> --------------------- WARNING ---------------------
> MSG: Setting end to equal start[1]
> ---------------------------------------------------
> 
> --------------------- WARNING ---------------------
> MSG: Setting end to equal start[1]
> ---------------------------------------------------
> t/Assembly/core.t ............................ 246/890 Can't do inplace edit without backup at Bio/Root/IO.pm line 513.
> # Looks like you planned 890 tests but ran 246.
> # Looks like your test exited with 25 just after 246.
> t/Assembly/core.t ............................ Dubious, test returned 25 (wstat 6400, 0x1900)
> Failed 644/890 subtests
> 
> Is it ok to install Bioperl anyway?
> 
> Thanks for your help!
> 
> Cerebron Emtadrat
> 
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