[Bioperl-l] drawing genome comparison cross linking tracks?

[Fields, Christopher J]

Let us know if this can be of use to the community, I'm sure others would find it useful as well.

chris

On Jan 17, 2013, at 11:33 AM, Adam Witney <awitney at sgul.ac.uk> wrote:

> 
> Thanks Chris. I hadn't seen SynBrowse before, looks good.
> 
> But I would like to do this without all the database/webserver overhead, I have a perl script that can interact with a gbrowse_syn database to generate images ie no webserver, I just need to separate out the database stuff now.
> 
> Thanks again
> 
> Adam
> 
> On 17/01/2013 13:37, Fields, Christopher J wrote:
>> Gbrowse_syn, SynBrowse, and others can do this, but there isn't a pre-packaged way of drawing this that I know of analogous to Biopython's.  It would be nice to have, though.
>> 
>> chris
>> 
>> On Jan 17, 2013, at 5:45 AM, Adam Witney <awitney at sgul.ac.uk> wrote:
>> 
>>> Hi,
>>> 
>>> I would like to produces graphics as shown in this section (cross linking between genome tracks) [scroll down a little to see the pictures]:
>>> 
>>> http://www.biopython.org/DIST/docs/tutorial/Tutorial.html#htoc211
>>> 
>>> but using perl. Can Bio::Graphics do this? I can only find Gbrowse_syn, but this works within a web browser, I would like to generate these diagrams from a stand alone script. If not does anyone know any perl libraries that can be used to show genome comparisons?
>>> 
>>> Thanks
>>> 
>>> Adam
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>> 
>> 
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