[Bioperl-l] Why cannot I get sequences for some entries?

Jason Stajich jason.stajich at gmail.com
Thu Aug 22 17:01:51 UTC 2013


are you using Bio::DB::GenPept as your object since it is a protein ID.

On Aug 19, 2013, at 1:31 AM, cacaucenturion2 <cacaucenturion2 at gmail.com> wrote:

> Hi all, 
> 
> I tried 
> 
> my $seq = $gb->get_Seq_by_gi('162138530');
>                print $seq->seq."\n";
> 
> I am sure that the sequence whose GI is 162138530 does exist in the database (http://www.ncbi.nlm.nih.gov/protein/162138543). However, no sequences could be given. Has anyone encountered the similar problem? Thanks.
> 
> Sincerely yours,
> Cacau
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Jason Stajich
jason.stajich at gmail.com
jason at bioperl.org





More information about the Bioperl-l mailing list