[Bioperl-l] Taxa Id from blast report

[shalu sharma]

Thanks a lot Peter.
Actually i still use legacy blast, so do i also get description of the hit
if i use tabular format and also do i have to format the database with some
modification ?
I really appreciate you help.

Thanks
Shalu


On Thu, Apr 18, 2013 at 12:05 PM, Peter Cock <p.j.a.cock at googlemail.com>wrote:

> On Thu, Apr 18, 2013 at 4:17 PM, shalu sharma <sharmashalu.bio at gmail.com>
> wrote:
> > Hi All.
> >           I have a default blastx report and i want to get taxa ids from
> it
> > along with other usual information. I am using Bioperl to parse the blast
> > report, but i don't know how to get taxa ids.
> >
> > Thanks
> > Shalu
>
> If you upgrade to the latest BLAST+ and you can have this as a
> column in the tabular output - easy to parse in Perl etc:
>
> http://blastedbio.blogspot.co.uk/2012/05/blast-tabular-missing-descriptions.html
>
> For example,
>
> $ blastx -outfmt "6 std staxids" ...
>
> Peter
>