[Bioperl-l] Codon boostraping

[Tristan Lefebure]

Hi Jason, so I am trying to find my way into the github world, but well I am 
stuck after doing this:

git clone git at github.com:TristanLefebure/bioperl-live.git
cd bioperl-live/
git remote add upstream git://github.com/bioperl/bioperl-live.git
git fetch upstream
git push origin master
#doing some editing to Bio/Align/Utilities.pm
git add Bio/Align/Utilities.pm
git commit -m "Little patch to Utilities.pm to allow codon bootstraping"
git show
#looks good, feeling quite happy, for the moment

Then I moved to github bioperl webpage -> pool request, but it says: "Oops! 
The bioperl:master branch is already up-to-date with TristanLefebure:master — 
maybe you want to try something else?"

#now I feel like a cow with a smartphone...

What is the stupid thing I am missing?

Thanks!

--
Tristan



On Wednesday 09 May 2012 12:52:43 Jason Stajich wrote:
> Tristan - it looks pretty good -- have you had any luck forking code on
> github? this way your patch can be rolled in with your name as the
> developer if you submit the changes as a pull request.
> 
> http://help.github.com/fork-a-repo/
> 
> We can certainly commit things without this, but just trying to give you
> opportunity to be more closely involved if you would like.
> 
> Jason
> 
> On May 9, 2012, at 8:23 AM, Tristan Lefebure wrote:
> > Hi there,
> > 
> > Just submitted the following patch to do codon bootstrapping:
> > 
> > https://redmine.open-bio.org/issues/3350
> > 
> > I'll appreciate your comments on this tiny proposed addition to
> > Bio::Align::Utilities
> > 
> > Thanks!
> > 
> > --
> > Tristan Lefebure
> > 
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 
> Jason Stajich
> jason.stajich at gmail.com
> jason at bioperl.org