[Bioperl-l] BioPerl 1.6.901 and prot4est

[Fields, Christopher J]

Horacio,

Actually, for the 1.6.x releases I have been the release manager, Sendu release the latter 1.5.x releases.  If you can whittle down the problem to a manageably reproducible issue you can submit it along with any relevant code/data to the bug report system, just let me know when you do so I can have a look.

chris

On May 22, 2012, at 11:04 AM, Horácio Montenegro wrote:

>   hi Chris,
> 
>   yes, I reported this behaviour to the prot4est author a couple of
> months ago, but got only an automated reply - it says he is the only
> developer and is not always able to answer. I also tried to contact
> Sendu Bala, the maintainer (as found on Bioperl 1.6.1 source), but got
> no reply either.
> 
>   I will try do debug a bit more, and then I will submit a bug report.
> 
>   thanks,
>        Horacio
> 
> On Mon, May 21, 2012 at 2:43 PM, Fields, Christopher J
> <cjfields at illinois.edu> wrote:
>> Horácio,
>> 
>> Re: where the bug lies, it's hard to say.  There have been several significant changes with bioperl's Taxonomy/Tree code over the last several years.  Does the prot4est author (James Wasmuth) know about this?
>> 
>>   http://www.compsysbio.org/lab/?q=prot4EST
>> 
>> You are also more than welcome to submit a bug report on this so we can track it.  The following page describes how and where to do so:
>> 
>>   http://www.bioperl.org/wiki/Bugs
>> 
>> (if you hear anything from the prot4est folks let us know)
>> 
>> chris
>> 
>>