[Bioperl-l] Bio::Seq->subseq documentation

[Jason Stajich]

It should be changed in git, but I am not sure if the autogeneration of the pdoc is still going on on the main website host.  

Jason
On May 18, 2012, at 1:56 PM, Jim Hu wrote:

> Is the doc generated from bioperl-live or from the last stable version?  If the former, I suppose I could change it in git (or ask Nathan in my lab to do it).
> 
> On May 18, 2012, at 9:49 AM, Joel Martin wrote:
> 
>> the documentation for Bio::Seq looks out of sync to me, the code for
>> Bio::Seq is just
>> sub subseq {
>>   return shift->primary_seq()->subseq(@_);
>> }
>> 
>> so, it takes what Bio::PrimarySeq takes.
>> 
>> Joel
>> 
>> On Thu, May 17, 2012 at 10:07 PM, Jim Hu <jimhu at tamu.edu> wrote:
>>> In the page for Bio::Seq,
>>> 
>>>       http://doc.bioperl.org/releases/bioperl-current/bioperl-live/Bio/Seq.html#POD5
>>> 
>>> I think the usage should match the documentation for Bio::PrimarySeq
>>> 
>>>       http://doc.bioperl.org/releases/bioperl-current/bioperl-live/Bio/PrimarySeq.html#POD4
>>> 
>>> indicating that the arguments can be integers OR location objects.  Is that correct?
>>> 
>>> Jim
>>> =====================================
>>> Jim Hu
>>> Professor
>>> Dept. of Biochemistry and Biophysics
>>> 2128 TAMU
>>> Texas A&M Univ.
>>> College Station, TX 77843-2128
>>> 979-862-4054
>>> 
>>> 
>>> 
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> 
> =====================================
> Jim Hu
> Professor
> Dept. of Biochemistry and Biophysics
> 2128 TAMU
> Texas A&M Univ.
> College Station, TX 77843-2128
> 979-862-4054
> 
> 
> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
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Jason Stajich
jason.stajich at gmail.com
jason at bioperl.org