[Bioperl-l] Fwd: blast result not matching.

[Manju Rawat]

Thanks to all..Its working..
I tried that module...and got the result follwing result in terminal...


waiting......db is All GenBank+EMBL+DDBJ+PDB sequences (but no EST,
STS,GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
hit name is ref|NM_181451.1|
score is 240
hit name is ref|NM_001008415.1|
score is 234
hit name is ref|XM_002706247.1|
score is 212
hit name is ref|XM_002683856.1|
score is 208
hit name is gb|EF197120.1|
score is 208
hit name is ref|XR_083566.1|
score is 198
hit name is ref|NM_001097567.1|
score is 198
hit name is ref|NM_001098089.1|
score is 198
hit name is ref|XM_002699708.1|
score is 192
hit name is ref|XM_592786.5|
score is 192
hit name is ref|XM_001251693.3|
score is 192
hit name is gb|AF490400.1|
score is 190
hit name is gb|AY075103.1|
score is 190
hit name is ref|XR_083457.1|
score is 178


But this is not showing all query coverage as it shows in simple balst.(see
attached file)
and i also want to write that result in a blast file..Is there any method
which can write the remoteblast output
in a file with blast extension?


Thanks
Manju Rawat.
-------------- next part --------------
A non-text attachment was scrubbed...
Name: res.blast
Type: application/octet-stream
Size: 218976 bytes
Desc: not available
URL: <http://lists.open-bio.org/pipermail/bioperl-l/attachments/20110909/06eb823d/attachment-0003.obj>