[Bioperl-l] no blast result
Manju Rawat
manju.rawat2 at gmail.com
Tue Sep 13 07:20:07 EDT 2011
this is the perl code
#!usr/bin/perl -w
use Bio::Perl;
use Bio::SearchIO
use Bio::Tools::Run::StandAloneBlast;
@params = ('database' => 'swissprot',
'READMETHOD' => 'Blastn');
$factory = Bio::Tools::Run::StandAloneBlast->new(@params);
$input = Bio::Seq->new(-id=>"testquery",-seq=>"gatcgtataccgtacagct");
$blast_report = $factory->blastall($input);
write_blast(">rs.blast",$blast_report);
It showing error that
Use of uninitialized value $_[0] in join or string at
/usr/share/perl/5.10/File/Spec/Unix.pm line 41.
MSG: cannot find path to blastall
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