[Bioperl-l] Blast > parsing result in Exel

[Peter Cock]

On Tue, Nov 15, 2011 at 9:25 AM, Giorgio C <casaburi at ceinge.unina.it> wrote:
>
> Hy everybody,
>
> in this situation froma blast (-m 1) result file :
>
> ...
>
> I need to parse in an exel sheet :
>
> 1)ID 2)Name of the hit 3)E-value 4)Score 5)Species
>
>
> 1) 132-291 2)mir2644b 3) 0,031 4)28 5) Medicago truncatula
>
> Is possible from a big blast result file obtain an exel with 5 columns where
> every field is the first hit of the blast result. Can anyone halp me to fix
> this problem ??? Also with a little script in perl.
>
> Thank you very much

Have you looked at any of the BioPerl BLAST parsing examples? e.g
http://www.bioperl.org/wiki/HOWTO:Beginners#BLAST
http://www.bioperl.org/wiki/HOWTO:SearchIO
http://www.bioperl.org/wiki/Module:Bio::SearchIO

See also http://seqanswers.com/forums/showthread.php?t=15489

Peter