[Bioperl-l] Modules to read MEGA output and reproduce the phylogenetic tree

Roy Chaudhuri roy.chaudhuri at gmail.com
Wed Nov 2 09:49:46 EDT 2011


MEGA can export trees in Newick format, which can be read by 
Bio::TreeIO. The tree can be drawn in EPS format using 
Bio::Tree::Draw::Cladogram. See:
http://www.bioperl.org/wiki/HOWTO:Trees

Roy.

On 02/11/2011 13:33, Dejian Zhao wrote:
> There are various packages on CPAN to cope with phylogenetic analysis. I
> wonder which module can read the output from other phylogenetic
> softwares, e.g. MEGA, and reproduce the phylogenetic tree. I want to
> produce a picture which combines the phylogenetic tree and the structure
> of each gene.
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