[Bioperl-l] how to prevent forced exit?
Ross KK Leung
ross at cuhk.edu.hk
Tue Mar 15 01:54:35 EDT 2011
$gb = new Bio::DB::GenBank(-retrievaltype => 'tempfile', -format =>
'Fasta');
$allseqobj = $gb->get_Stream_by_acc("A3ZI37");
l
print "HEELO";
while ($seqobj = $allseqobj->next_seq) {
#$seqobj = $allseqobj->next_seq;
$seq=$seqobj->seq;
}
print "222 HEELO";
I find that the 1st HEELO can be printed while the 2nd one can't. Google
does not return checking success/failure or null/exist of the Seq Object. As
the 1st HEELO can be executed, so no throw/exception occurs for the
get_Stream_by_acc. So what can I do? The real case is not hard-coding this
A3ZI37 but reading a file that may contain a lot of these "illegitimate"
accession numbers.
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