[Bioperl-l] read coverage

Jonas Zierer jonas.zierer at campus.lmu.de
Tue Jun 7 10:01:27 UTC 2011


Hi,

ich use Bio::DB::SAM to analyze bam files, which contain aligned
transcriptome reads.

Can I use the coverage function to get
	1. the coverage off all reads on one strand (not all strands as the
default)
	2. the coverage of all read-start-positions only

thx
bye




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