[Bioperl-l] BLAT psl file to GTF

[Chris Fields]

Bio::SearchIO::pal is one way, though I recall a psl2gff script (maybe from Don Gilbert?) out there somewhere that might be more up-to-date and faster.

chris

On Jul 21, 2011, at 9:19 AM, Amin Momin wrote:

> 
> Hi ,
>    I have been trying to convert a .psl file from BLAT into a GTF file. Is there a bioperl module capable of performing this. Or any tool that can be used to perform similar conversion. 
> 
> Amin
> 		 	   		  
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