[Bioperl-l] Fwd: perl

[Frank Schwach]

has somebody pointed you to the BioPerl HOWTOs already? All you need is
in there and illustrated in example scripts.

http://www.bioperl.org/wiki/HOWTOs

In particular, check out the Beginner HOWTO and the SeqIO

Frank


On Tue, 2011-07-26 at 13:46 +0100, Carnë Draug wrote:
> Please keep it the conversation on the mailing list. Also, I won't be
> doing your homework. There's plenty of documentation for perl and
> bioperl.
> 
> Carnë
> 
> 
> ---------- Forwarded message ----------
> From: Akash <akki.coool2 at gmail.com>
> Date: 26 July 2011 13:28
> Subject: perl
> To: carandraug+dev at gmail.com
> 
> 
> Sir
> 
> I am very thankful to you for your suggestion and I tried to work on
> the Bio-Perl but as it is very new for me, I am unable to understand
> in a very short period of time because the work I am doing, I have to
> show in next couple of days.
> 
> So Please can you help in this? I want to remove the "contgis" from a
> "fasta" file which contain more than "200 base pairs".
> 
> With Regards
> Akash
> 
> I am using this script right now
> 
> use strict;
> use Bio::SeqIO;
> my $in = Bio::SeqIO->new(-file=>"contigs.fa", '-format'=>'FASTA');
> my $out = Bio::SeqIO->new(-file=>">contigs1.fa", '-format'=>'FASTA');
> 
> while( my $Seq = $in->next_seq())
> {
> 
> }
> 
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