[Bioperl-l] EXCEPTION: Bio::Root::Exception

2BioInfo thamanchand at yahoo.com
Mon Jan 17 10:27:51 UTC 2011


I am having the same problem

On Jan 8, 6:38 am, Silav Bremos <sil... at yahoo.com> wrote:
> Hello
> I recently installed BioPerl on Ubuntu 10.10 with the Snaptic package manager.
> Install was easy. I tried to run the first tutorial script from:http://www.bioperl.org/wiki/Bptutorial.pl#Quick_getting_started_scripts
> $seq_object = get_sequence('swiss',"ROA1_HUMAN");
> write_sequence(">roa1.fasta",'fasta',$seq_object);
> I get this error:
> ------------ EXCEPTION: Bio::Root::Exception -------------
> MSG: id does not exist
> STACK: Error::throw
> STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:368
> STACK: Bio::DB::WebDBSeqI::get_Seq_by_id
> /usr/share/perl5/Bio/DB/WebDBSeqI.pm:168
> STACK: Bio::Perl::get_sequence /usr/share/perl5/Bio/Perl.pm:523
> STACK: tut1.pl:6
> Please help me decipher the exception. Perl version is 5.10. Thanks
> ---Silav
>
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