[Bioperl-l] building NGS pipeline

Adam Witney awitney at sgul.ac.uk
Mon Feb 28 11:06:42 UTC 2011


Hi,

I'm trying to put together a set of steps to runs some analysis on NGS data we have. I have found modules that wrap alignment software such as bowtie/bwa/maq, but are there any packages to calculate RPKM's etc? what are people using for this?

thanks for any help

adam



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