[Bioperl-l] Trimming low quality reads

[Jason Stajich]

I would use a faster implementation like the fastx toolkit - 
http://hannonlab.cshl.edu/fastx_toolkit/

There are lots of answers to NGS questions on seqanswers too
  http://www.google.com/search?q=site:seqanswers.com+trim


Jordi Durban wrote:
> Well, there's a program called Seqtrim that uses bioperl to trim the
> sequences.
> Here more information:
> http://www.scbi.uma.es/cgi-bin/seqtrim/seqtrim_login.cgi
> Hope this helps.
>
> 2011/2/16 shalabh sharma<shalabh.sharma7 at gmail.com>
>
>> Hi,
>>     Is there any bioperl module available to quality trim in fasta-qual
>>   format.
>> i am little worried about the efficiency as i have huge data (~ 50 gb).
>> Also i would really appreciate if some one has some other suggestions.
>>
>> Thanks
>> Shalabh
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>
>
>

-- 
Jason Stajich