[Bioperl-l] Fishing redundant sequences in FASTA files [Right formatting]

[Jason Stajich]

also see cd-hit which allows you to tune the %id matching.


Dave Messina wrote:
>> But one nice thing is clustering allows for partial matches (which I think
>> is the original criterion).  I don't believe SHA/MD5 would work for that
>> purpose.
>
>
> Yep, for sure. Checksums will find full-length exact matches only.
>
>
> Dave
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-- 
Jason Stajich
jason at bioperl.org
http://bioperl.org/wiki