[Bioperl-l] Problem installing CJFIELDS/BioPerl-1.6.1.tar.gz

[Scott Cain]

Hi Anjan,

Can you tell us what tests failed?

Scott


On Thu, Feb 3, 2011 at 5:20 PM, ANJAN PURKAYASTHA
<anjan.purkayastha at gmail.com> wrote:
> Hello,
> I am unable to install distribution CJFIELDS/BioPerl-1.6.1.tar.gz  on my Mac
> 10.6.6.
> Here is the tail end of the installation report:
> Result: FAIL
> Failed 9/329 test programs. 8/19347 subtests failed.
>  CJFIELDS/BioPerl-1.6.1.tar.gz
>  ./Build test -- NOT OK
> //hint// to see the cpan-testers results for installing this module, try:
>  reports CJFIELDS/BioPerl-1.6.1.tar.gz
> Warning (usually harmless): 'YAML' not installed, will not store persistent
> state
> Running Build install
>  make test had returned bad status, won't install without force
> Could not read '/Users/anjan/.cpan/build/GraphViz-2.04-NQf6M6/META.yml'.
> Falling back to other methods to determine prerequisites
> Failed during this command:
>  SHLOMIF/Error-0.17016.tar.gz                 : install NO
>  JSWARTZ/Cache-Cache-1.06.tar.gz              : install NO
>  LDS/AcePerl-1.92.tar.gz                      : install NO
>  JMCNAMARA/OLE-Storage_Lite-0.19.tar.gz       : install NO
>  JMCNAMARA/Spreadsheet-ParseExcel-0.58.tar.gz : install NO
>  GROMMEL/Math-Random-0.71.tar.gz              : install NO
>  JHI/Graph-0.94.tar.gz                        : install NO
>  JARW/Math-Spline-0.01.tar.gz                 : install NO
>  SHLOMIF/Statistics-Descriptive-3.0201.tar.gz : install NO
>  RONAN/SVG-2.50.tar.gz                        : install NO
>  JARW/Math-Derivative-0.01.tar.gz             : install NO
>  COGENT/Tree-DAG_Node-1.06.tar.gz             : install NO
>  ALLENDAY/SVG-Graph-0.02.tar.gz               : install NO
>  ADAMK/Task-Weaken-1.03.tar.gz                : install NO
>  ADAMK/Class-Inspector-1.25.tar.gz            : install NO
>  MKUTTER/SOAP-Lite-0.712.tar.gz               : install NO
>  CMUNGALL/Data-Stag-0.11.tar.gz               : install NO
>  LBROCARD/GraphViz-2.04.tar.gz                : writemakefile NO
> '/usr/bin/perl Makefile.PL' returned status 512
>  TOKUHIROM/Test-Requires-0.06.tar.gz          : install NO
>  DOY/Try-Tiny-0.09.tar.gz                     : install NO
>  RJBS/Test-Fatal-0.003.tar.gz                 : install NO
>  ADAMK/Params-Util-1.03.tar.gz                : install NO
>  RJBS/Sub-Install-0.925.tar.gz                : install NO
>  DROLSKY/Package-DeprecationManager-0.10.tar.gz: install NO
>  FLORA/MRO-Compat-0.11.tar.gz                 : install NO
>  DOY/Package-Stash-XS-0.21.tar.gz             : install NO
>  DOY/Package-Stash-0.25.tar.gz                : make_test NO
>  FLORA/Sub-Name-0.05.tar.gz                   : install NO
>  RJBS/Data-OptList-0.106.tar.gz               : install NO
>  CHOCOLATE/Scope-Guard-0.20.tar.gz            : install NO
>  RJBS/Sub-Exporter-0.982.tar.gz               : install NO
>  FLORA/Devel-GlobalDestruction-0.03.tar.gz    : install NO
>  FLORA/Class-MOP-1.12.tar.gz                  : make_test NO
>  DROLSKY/Moose-1.21.tar.gz                    : make_test NO
>  DAVECROSS/Array-Compare-2.01.tar.gz          : make_test NO
>  MHX/Convert-Binary-C-0.74.tar.gz             : install NO
>  TPEDERSE/Algorithm-Munkres-0.08.tar.gz       : install NO
>  MIROD/XML-Twig-3.37.tar.gz                   : install NO
>  JHI/Set-Scalar-1.25.tar.gz                   : install NO
>  DCONWAY/Parse-RecDescent-1.965001.tar.gz     : install NO
>  JMCNAMARA/Spreadsheet-WriteExcel-2.37.tar.gz : install NO
>  KMACLEOD/libxml-perl-0.08.tar.gz             : install NO
>  RBERJON/XML-Filter-BufferText-1.01.tar.gz    : install NO
>  PERIGRIN/XML-SAX-Writer-0.53.tar.gz          : install NO
>  RDF/Clone-0.31.tar.gz                        : install NO
>  MIROD/XML-XPathEngine-0.12.tar.gz            : install NO
>  TJMATHER/XML-RegExp-0.03.tar.gz              : install NO
>  TJMATHER/XML-DOM-1.44.tar.gz                 : install NO
>  MIROD/XML-DOM-XPath-0.14.tar.gz              : install NO
>  SHAWNPW/PostScript-0.06.tar.gz               : install NO
>  CJFIELDS/BioPerl-1.6.1.tar.gz                : make_test NO
>
> Any feedback on what may be going wrong will be immensley helpful.
> Thanks,
> Anjan
>
> --
> ===================================
> Anjan Purkayastha, PhD
> Senior Computational Biologist
> TessArae LLC
> 46090 Lake Center Plaza, Suite 304
> Potomac Falls, VA 20165**
> Mobile-703.740.6939
> ===================================
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> Bioperl-l at lists.open-bio.org
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>



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research