[Bioperl-l] Bio::Graphics imagemap and padding

Adam Witney awitney at sgul.ac.uk
Mon Dec 5 11:09:39 UTC 2011


Hi,

Image maps seem to be out of position if you use padding in the Panel, like this:

my $panel = Bio::Graphics::Panel->new( ….. -pad_left  => 20, -pad_right => 20 …… );

Without these options, the image map is fine. Is this a known issue?

Also on a side note, I noticed that when using Bio::Graphics with Dancer, some of the CGI code was blocking somewhere (I found a reference to a similar problem with CGI and Catalyst), swapping CGI with HTML::Entities fixes it:

sub create_web_map {
….
	eval "require HTML::Entities" unless HTML::Entities->can('encode_entities');
….
	my $title  = HTML::Entities::encode_entities($self->make_link($tr,$feature,1));
 	my $target = HTML::Entities::encode_entities($self->make_link($tgr,$feature,1));
…..
}

Thanks

Adam



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