[Bioperl-l] Bioperl query....

[shalabh sharma]

Hi Manju,
                 Just follow the link sent by Roy. It also contain some
useful example scripts.
What i am suggesting is , you should run a blast on a very small data set
that you can inspect easily and manually.
Then parse it using SeachIO (follow the link) and you will get a fair idea
that how it works.

-Shalabh



On Tue, Aug 30, 2011 at 7:25 AM, Roy Chaudhuri <roy.chaudhuri at gmail.com>wrote:

> Hi Manju,
>
> See:
> http://www.bioperl.org/wiki/**HOWTO:SearchIO<http://www.bioperl.org/wiki/HOWTO:SearchIO>
>
> Cheers,
> Roy.
>
>
> On 30/08/2011 12:22, Manju Rawat wrote:
>
>> Hey Pls help me..
>> I am very new in Bioperl..
>> And i want to use blast report in my programming..
>> But i dnt know how to use it...pls tell me how to use HSP,gaps.etc
>> methods??/
>> how to use them to extract valus from blast file..
>>
>> Thanks
>> Manju Rawat
>> ______________________________**_________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/**mailman/listinfo/bioperl-l<http://lists.open-bio.org/mailman/listinfo/bioperl-l>
>>
>
> ______________________________**_________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/**mailman/listinfo/bioperl-l<http://lists.open-bio.org/mailman/listinfo/bioperl-l>
>



-- 
Shalabh Sharma
Scientific Computing Professional Associate (Bioinformatics Specialist)
Department of Marine Sciences
University of Georgia
Athens, GA 30602-3636