[Bioperl-l] installation error

Tim timmcilveen at talktalk.net
Fri Apr 15 23:35:21 UTC 2011


Hi everyone,
I'm having a problem installing Bioperl with my new install of Fedora 14.
I have installed bioperl using GitHub.


            $ git clone git://github.com/bioperl/bioperl-live.git

            I told Perl where to find it:

            export PERL5LIB="$HOME/tm2383/bioperl-live:$PERL5LIB"

            Then I tested the install:
            $ perl -MBio::Perl -le 'print Bio::Perl->VERSION;'


            I got this error:


            Can't locate Bio/Perl.pm in @INC (@INC contains:
            /usr/local/lib64/perl5 /usr/local/share/perl5
            /usr/lib64/perl5 /usr/share/perl5 /usr/lib64/perl5
            /usr/share/perl5
            /usr/local/lib64/perl5/site_perl/5.10.0/x86_64-linux-thread-multi
            /usr/local/lib/perl5/site_perl/5.10.0
            /usr/lib64/perl5/vendor_perl/5.10.0/x86_64-linux-thread-multi /usr/lib/perl5/vendor_perl
            /usr/lib/perl5/site_perl .).


            I have checked my Perl installation:



            find / -name 'perl'


            /usr/bin/perl


            /usr/src/kernels/2.6.35.11-83.fc14.x86_64/tools/perf/scripts/perl


            /usr/src/kernels/2.6.35.6-45.fc14.x86_64/tools/perf/scripts/perl


            /usr/libexec/perf-core/scripts/perl

My Perl is is /usr/bin/perl, but for some reason /usr/local/lib64/perl5 
is being mentioned in the error message. I'm not expert at Linux, so I 
have reported all I can about the problem, using the information that I 
knew how to retrieve. I hope this helps!

Any advice would be great

Tim







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