[Bioperl-l] not recognizing hsp in a hit

[Dave Messina]

I should also say: I wouldn't be surprised if the blast-style output that
Blat produces is slightly nonstandard and causes our parser to make
mistakes. By the way, which version of Blat are you using?

It looks like Jim Kent has taken Blat at least semi-commercial:
http://www.kentinformatics.com/products.html
If there's a new version of blat, I don't think BioPerl has seen it yet.

Can anyone confirm or deny recent Blat output format changes?

Dave