[Bioperl-l] 454 raw Quality

[Joshua Udall]

Are you asking for a way to generate a single score for an entire
read?  Simply loop individually over the qual values in a qual object
with a $counter and $total.

On Fri, Apr 15, 2011 at 9:10 AM, Andrei Tudor
<andrei.tudor at rocketmail.com> wrote:
> Hello,
>
>
>
> Is there a way to get a quality score for a 454 sequencing?
> I have the qual and fasta file of the reads, but is there a script that calculates the overall score?
>
> Thanks,
> Andrei
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-- 
Joshua Udall
Assistant Professor
295 WIDB
Plant and Wildlife Science Dept.
Brigham Young University
Provo, UT 84602
801-422-9307
Fax: 801-422-0008
USA