[Bioperl-l] question about Bio::Tools::Run::RemoteBlast

Smithies, Russell Russell.Smithies at agresearch.co.nz
Tue Nov 9 20:08:23 UTC 2010


Not sure if this will work but have you tried using STDOUT as the filename then piping all the output to a single file?
The other (much simpler) option is just concatenate all the outputs into a single file when it's finished.

--Russell

-----Original Message-----
From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of njauxiongjie
Sent: Tuesday, 9 November 2010 10:05 p.m.
To: bioperl-l
Subject: [Bioperl-l] question about Bio::Tools::Run::RemoteBlast

Hi, 

I have used the scripts list in section of "SYNOPSIS" in th webpage http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Tools/Run/RemoteBlast.pm.

there are two line of the code like below:
my $filename = $result->query_name()."\.out";
          $factory->save_output($filename);
this saved the blast result in separated files by the query name.

my question is: how can i save the blast results of all querys in one file?

  

_______________________________________________
Bioperl-l mailing list
Bioperl-l at lists.open-bio.org
http://lists.open-bio.org/mailman/listinfo/bioperl-l
=======================================================================
Attention: The information contained in this message and/or attachments
from AgResearch Limited is intended only for the persons or entities
to which it is addressed and may contain confidential and/or privileged
material. Any review, retransmission, dissemination or other use of, or
taking of any action in reliance upon, this information by persons or
entities other than the intended recipients is prohibited by AgResearch
Limited. If you have received this message in error, please notify the
sender immediately.
=======================================================================




More information about the Bioperl-l mailing list