[Bioperl-l] codon tables, finding ORFs

Robert Buels rmb32 at cornell.edu
Fri May 21 20:11:24 UTC 2010


Brian Osborne wrote:
> The user will use translate(), which can do something like this:
> 
> $prot_obj = $my_seq_object->translate(-orf => 1,
>                                       -start => "atg" );

Yes, translate() has some non-default options for overriding this 
behavior. This doesn't address the question of whether including these 
other start codons is a good default.

Rob



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