[Bioperl-l] Next-gen modules

[Albert Vilella]

> I think not. Well, at least SeqFeature::Store doesn't scale. Try storing
> millions of features in a database and watch it crawl to complete
> unusability. I can't imagine a db scaling to holding hundreds of TB of data
> either. I'm also not sure what the benefit is. There are already high-speed
> ways of indexing your fastq or bam files.

Hi Sendu,

What are the available options to have a quick indexing of fastq files
that can be integrated into bioperl? Bio::Index::fastq can be
painfully slow for the latest Illumina runs...

Cheers,

Albert.