[Bioperl-l] Getting whole gene info with SeachIO

[shalabh sharma]

Hey Juan,
            You need to use $hit->description;

-Shalabh


On Mon, Jun 28, 2010 at 1:19 PM, Juan Jovel <jovel_juan at hotmail.com> wrote:

>
> Hello Everybody!
>
> I generally use SearchIO to parse my blast reports.  To extract hit name, I
> do:
>
> ...
>
> while (my $hsp = $hit->next_hsp){
> ...
>   my $hit_name = $hit -> name();
> ...
> }
>
> It usually gives me something like:
>
> ref|NC_006884.1|
>
> How can I get ALL the information contained in the name line of that hit?,
> for example:
>
> >gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome
>
> THANKS IN ADVANCE!
>
> JUAN
>
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