[Bioperl-l] Retrieving upstream & downstream sequences

[Stefan Kirov]

Try the ensembl API
http://www.ensembl.org/info/docs/api/core/core_tutorial.html

Cheers,
Stefan

On 6/14/2010 8:48 AM, Ross KK Leung wrote:
> If I have an accession number for an mRNA/cDNA/gene (e.g.
> http://www.ncbi.nlm.nih.gov/nuccore/51980295), I find sometimes if I
> retrieve the genbank file and parse /dbxref then I may sometimes be able to
> get some extra information but then the page is not readily usable, e.g.
>
> http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=full_repo
> rt&list_uids=24377
>
> is there any way to automatically retrieve its upstream&  downstream genomic
> sequence (e.g. 500bp)?
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
>    

-------------- next part --------------
A non-text attachment was scrubbed...
Name: stefan_kirov.vcf
Type: text/x-vcard
Size: 207 bytes
Desc: not available
URL: <http://lists.open-bio.org/pipermail/bioperl-l/attachments/20100615/ecb2bf0f/attachment-0004.vcf>