[Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3

[armendarez77 at hotmail.com]

Hello,

My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository.  Is he using the correct git path?

zlawson at blaze:~/source/bioperl-dev$ 
git-clone http://github.com/bioperl/bioperl-dev.git
Initialized 
empty Git repository in 
/home/zlawson/source/bioperl-dev/bioperl-dev/.git/
Getting 
alternates list for 
http://github.com/bioperl/bioperl-dev.git
Getting 
pack list for http://github.com/bioperl/bioperl-dev.git
Getting 
index for pack 8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767
Getting 
index for pack f4ab7dabc9b978eefae48bfcbb60adf121d67544
Getting 
pack 8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767
 which 
contains 773d8780bb982f858883cecca28cc45a919755bf
error: 
Unable to get pack file 
http://github.com/bioperl/bioperl-dev.git/objects/pack/pack-8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767.pack
transfer 
closed with 20247502 bytes remaining to read
error: 
Unable to find 773d8780bb982f858883cecca28cc45a919755bf under 
http://github.com/bioperl/bioperl-dev.git
Cannot 
obtain needed object 
773d8780bb982f858883cecca28cc45a919755bf

Thank you,
Veronica


> From: dave at davemessina.com
> Date: Mon, 7 Jun 2010 20:33:28 +0200
> To: armendarez77 at hotmail.com
> CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org
> Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3
> 
> 
> On Jun 7, 2010, at 8:27 PM, <armendarez77 at hotmail.com> wrote:
> 
> > Hello again,
> > 
> > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules.  We looked at CPAN, but they weren't found their either.  From where can we download these modules?
> 
> Right, it's in bioperl-dev, not bioperl-core, so you can download it from here:
> 
> http://github.com/bioperl/bioperl-dev
> 
> 
> Dave
> 
> 
> > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3
> > > From: cjfields at illinois.edu
> > 
> > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested.
> 
> 
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