[Bioperl-l] display sequence alignment

[Jason Stajich]

I've done this by marking it up an alignment into HTML with colors, but 
no bioperl module for it that I know of. My way was pretty heavy 
(producing large files) but maybe a more compact CSS approach could 
produce smaller files.

How else were you thinking of seeing this - in a PNG ?

-jason

Albert Vilella wrote:
> I am actually also interested in this :-)
>
> My requirements are to be able to define an image size, like 1200x800
> pixels, and then have a representation of the alignment produced
> through a script, with the clustalw or nucleotide colour palette like
> in Jalview.
>
> Anyone?
>
> On Tue, Feb 16, 2010 at 2:26 PM, Jessica Sun<jessica.sun at gmail.com>  wrote:
>    
>> Do any one know how to display protein/peptide alignments in color using
>> bioperl.
>>
>> thx
>>
>> On Mon, Feb 15, 2010 at 9:35 AM, Jessica Sun<jessica.sun at gmail.com>  wrote:
>>
>>      
>>> ---------- Forwarded message ----------
>>> From: Jessica Sun<jessica.sun at gmail.com>
>>> Date: Fri, Feb 12, 2010 at 8:44 PM
>>> Subject: one more question
>>> To: bioperl-l at lists.open-bio.org
>>>
>>>
>>> Does anyone knows how to get genomic(dna) sequences(with right sub regions)
>>> in gbk format when you only have NM_(mRNA) accession numbers.
>>>
>>> Thanks,
>>>
>>>
>>> --
>>> Jessica Jingping Sun
>>>
>>>
>>>
>>> --
>>> Jessica Jingping Sun
>>>
>>>        
>>
>> --
>> Jessica Jingping Sun
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>>      
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>