[Bioperl-l] Hello

[Smithies, Russell]

Or as Michael suggests, you could download the Genbank file for the genome http://www.ncbi.nlm.nih.gov/nuccore/NC_000962  as it's fairly small and pull the gene annotations from that.
Of course, I'd recommend reading this:
http://www.bioperl.org/wiki/HOWTO:Feature-Annotation#Getting_the_Annotations


--Russell

> -----Original Message-----
> From: michael watson (IAH-C) [mailto:michael.watson at bbsrc.ac.uk]
> Sent: Monday, 15 February 2010 8:51 a.m.
> To: Smithies, Russell; 'chirag matkar'
> Cc: 'bioperl-l at lists.open-bio.org'
> Subject: RE: Hello
> 
> If I was going to do this, I wouldn't use BioPerl.
> 
> I'd download the RefSeq entry for the genome (Mtb)
> Then I would use the EMBOSS extractfeat program to extract fasta sequences
> of the gene features.
> 
> Simples.
> ________________________________________
> From: bioperl-l-bounces at lists.open-bio.org [bioperl-l-bounces at lists.open-
> bio.org] On Behalf Of Smithies, Russell
> [Russell.Smithies at agresearch.co.nz]
> Sent: 14 February 2010 19:43
> To: 'chirag matkar'
> Cc: 'bioperl-l at lists.open-bio.org'
> Subject: Re: [Bioperl-l] Hello
> 
> Hi,
> One of these should get you most of the way to what you need.
> http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#How_do_I_retrieve_a_
> long_list_of_sequences_using_a_query.3F
> http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#How_do_I_retrieve_th
> e_DNA_sequence_using_EntrezGene_IDs.3F
> http://www.bioperl.org/wiki/HOWTO:EUtilities_Web_Service
> 
> You may find it easier if you have the gene id numbers rather than just
> the gene names.
> 
> 
> Hope this helps,
> 
> Russell
> 
> From: chirag matkar [mailto:chirag.matkar at gmail.com]
> Sent: Saturday, 13 February 2010 11:16 p.m.
> To: Smithies, Russell
> Subject: Hello
> 
> Hello Sir,
> i am working on Bioperl and have a doubt.
> I have aList of gene names of Mtb H37Rv and i want to retrieve FASTA
> format of all sequences
> How can i do that?
> 
> --
> Regards,
> Chirag Matkar,
> BTech Bioinformatics,
> Dr.D.Y.Patil Biotechnology and Bioinformatics Institute,
> http://www.dypbbi.edu.in
> Pune.
> 
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