[Bioperl-l] Bio::Graphics inside PHP

[Lincoln Stein]

Actually this would be an easy feature to add.

Lincoln

On Mon, Feb 8, 2010 at 2:41 PM, Scott Cain <scott at scottcain.net> wrote:

> Lincoln,
>
> Something I've been thinking about recently is whether it would be
> possible to have gbrowse_img generate the image and the image map
> separately so that they could be used in something like this (a php
> page).  It could just return the image map if something like map=1
> were supplied as an argument.  Could that be done?
>
> Scott
>
>
> On Mon, Feb 8, 2010 at 11:33 AM, Lincoln Stein <lincoln.stein at gmail.com>
> wrote:
> > There's an embeddable version of gbrowse_img that generates the imagemap
> so
> > it is clickable. If you use an <iframe> the formatting usually works out
> > pretty well.
> >
> > Lincoln
> >
> > On Mon, Feb 8, 2010 at 11:20 AM, Daniel Renfro <bluecurio at gmail.com>
> wrote:
> >
> >> I've been trying different ways to do this same thing. At EcoliWiki.net
> we
> >> use GBrowse to show all the strains of Ecoli and assoc phage, plasmids,
> >> etc.
> >> so this is definitely something I think many other model-organism
> databases
> >> could use.
> >>
> >> The final solution was to construct a link to gbrowse_img with all the
> >> necessary variables coming in from $_REQUEST and throw it in the src=""
> >> attribute of the <img> tag. This works pretty good for what we're doing.
> >> Good luck.
> >>
> >> -Daniel Renfro
> >>
> >> Hu Lab Research Associate
> >> Dept. of Biochemistry and Biophysics
> >> 2128 TAMU
> >> Texas A&M Univ.
> >> College Station, TX 77843-2128
> >> 979-862-4055
> >> _______________________________________________
> >> Bioperl-l mailing list
> >> Bioperl-l at lists.open-bio.org
> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l
> >>
> >
> >
> >
> > --
> > Lincoln D. Stein
> > Director, Informatics and Biocomputing Platform
> > Ontario Institute for Cancer Research
> > 101 College St., Suite 800
> > Toronto, ON, Canada M5G0A3
> > 416 673-8514
> > Assistant: Renata Musa <Renata.Musa at oicr.on.ca>
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> >
>
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot
> net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research
>



-- 
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <Renata.Musa at oicr.on.ca>