[Bioperl-l] Aligning Reads

[shalu sharma]

Thanks a lot for your valuable suggestions.

Thanks
Shalu


2010/2/5 Thomas Källman <thomas.kallman at ebc.uu.se>

> Hi Shalu,
>
> Not really related to bioperl, but you can find a nice list of software
> aligning short read data at
> http://seqanswers.com/forums/showthread.php?t=43
>
> /thomas
>
> On Feb 5, 2010, at 8:21 PM, shalu sharma wrote:
>
>  Hi All,
>>           Is there any program available which can align reads (200-400bp
>> in fasta format) against a reference sequence and the whole alignment can
>> be
>> viewed graphically.
>> I tried bowtie but i think it only takes fastaq format.
>>
>> Thanks
>> shalu
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>
>