[Bioperl-l] After Checkout of Bioperl-live version doesn't seem tochange

[Lacey Sanderson]

Okay,
> directly from the command line (don't relogin)
>
> $ export PERL5LIB=/usr/local/share/applications/Bioperl/bioperl-live: 
> $PERL5LIB
> $ perl -MBio::Perl -e 'print Bio::Perl->VERSION'
That gives me the correct version... For that user until I log out...

I sudoed in to .profile and added the line directly but that doesn't  
seem to have helped.

How would I tell perl to look in the same place for Bioperl for ALL  
users?

Lacey

On 3-Feb-10, at 12:34 PM, Mark A. Jensen wrote:

> Well, that's progress. It hard to debug these things remotely, but now
> you can at least work around the problem by using the -I flag. The  
> next
> weak link I would try to eliminate is the append to the .profile  
> file. Just
> do directly from the command line (don't relogin)
>
> $ export PERL5LIB=/usr/local/share/applications/Bioperl/bioperl-live: 
> $PERL5LIB
> $ perl -MBio::Perl -e 'print Bio::Perl->VERSION'
>
> If this gives 1.0069, then the problem is in that append (and, you  
> can also do your work!).
> (If you're a sudoer, I'd just edit that file directly.)
>
> cheers MAJ
> ----- Original Message ----- From: "Lacey Sanderson" <laceyanne_sanderson at shaw.ca 
> >
> To: "Mark A. Jensen" <maj at fortinbras.us>
> Cc: <bioperl-l at lists.open-bio.org>
> Sent: Wednesday, February 03, 2010 1:21 PM
> Subject: Re: [Bioperl-l] After Checkout of Bioperl-live version  
> doesn't seem tochange
>
>
>> That gives me the 1.069 that I was wanting so the problem seems to  
>> be  that perl is finding the wrong installation by default...
>>
>> Lacey
>>
>> On 3-Feb-10, at 12:14 PM, Mark A. Jensen wrote:
>>
>>> perl -MBio::Perl -I/usr/local/share/applications/Bioperl/bioperl-  
>>> live -le 'print Bio::Perl->VERSION;'
>>
>>
>

---------------------------------
Lacey Sanderson
Bioinformaticist
Pulse Crop Breeding and Genetics
Department of Plant Sciences
University of Saskatchewan.