[Bioperl-l] Fw: After Checkout of Bioperl-live version doesn't seem tochange

[Chris Fields]

Yes, though I'm assuming by .profile you mean the user-specific one ($HOME/.profile) and not the system/global one.  The local one should suffice.

chris

On Feb 3, 2010, at 12:56 PM, Mark A. Jensen wrote:

> up to list-- MAJ
> ----- Original Message ----- From: "Mark A. Jensen" <maj at fortinbras.us>
> To: "Lacey Sanderson" <laceyanne_sanderson at shaw.ca>
> Sent: Wednesday, February 03, 2010 1:34 PM
> Subject: Re: [Bioperl-l] After Checkout of Bioperl-live version doesn't seem tochange
> 
> 
>> Well, that's progress. It hard to debug these things remotely, but now
>> you can at least work around the problem by using the -I flag. The next
>> weak link I would try to eliminate is the append to the .profile file. Just
>> do directly from the command line (don't relogin)
>> 
>> $ export PERL5LIB=/usr/local/share/applications/Bioperl/bioperl-live:$PERL5LIB
>> $ perl -MBio::Perl -e 'print Bio::Perl->VERSION'
>> 
>> If this gives 1.0069, then the problem is in that append (and, you can also do your work!).
>> (If you're a sudoer, I'd just edit that file directly.)
>> 
>> cheers MAJ
>> ----- Original Message ----- From: "Lacey Sanderson" <laceyanne_sanderson at shaw.ca>
>> To: "Mark A. Jensen" <maj at fortinbras.us>
>> Cc: <bioperl-l at lists.open-bio.org>
>> Sent: Wednesday, February 03, 2010 1:21 PM
>> Subject: Re: [Bioperl-l] After Checkout of Bioperl-live version doesn't seem tochange
>> 
>> 
>>> That gives me the 1.069 that I was wanting so the problem seems to be  that perl is finding the wrong installation by default...
>>> 
>>> Lacey
>>> 
>>> On 3-Feb-10, at 12:14 PM, Mark A. Jensen wrote:
>>> 
>>>> perl -MBio::Perl -I/usr/local/share/applications/Bioperl/bioperl- live -le 'print Bio::Perl->VERSION;'
>>> 
>>> 
>>> 
> 
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