[Bioperl-l] Bio::Index::Fastq support for gzipped files

[Albert Vilella]

aaah, so we can still be first in bioperl ;-)

On Tue, Feb 23, 2010 at 5:01 PM, Peter <biopython at maubp.freeserve.co.uk> wrote:
> On Tue, Feb 23, 2010 at 4:51 PM, Albert Vilella <avilella at gmail.com> wrote:
>> Hi,
>>
>> Maybe already answered somewhere but, do we have support for
>> gzipped fasta/fastq files?
>>
>> Google tells me biopython does, but I couldn't guess for bioperl...
>>
>
> To clarify, we've discussed this on the Biopython mailing list, and
> Renato Alves and I have been exploring possible implementation
> on git branches, but we don't yet have indexing of gzipped files on
> the trunk. But it would be nice :)
>
> Peter
>