[Bioperl-l] sim4cc vs sim4

[michael watson (IAH-C)]

Law's first law:

http://bioinformatics.roslin.ac.uk/lawslaws.html
________________________________________
From: bioperl-l-bounces at lists.open-bio.org [bioperl-l-bounces at lists.open-bio.org] On Behalf Of Jason Stajich [jason at bioperl.org]
Sent: 24 February 2010 19:50
To: Jeff S Kittrell
Cc: bioperl-l
Subject: Re: [Bioperl-l] sim4cc vs sim4

sending an example can help -- I guess the formats are different enough
that the parser doesn't work.  Why people don't just generate a GFF or
simple tab format when they write a new tool, I don't know....

-jason

Jeff S Kittrell wrote:
>
> Has anyone used the sim4 file parser on a sim4cc? When I parse the
> file with SearchIO(-format => 'sim4') or Bio::Tools::Sim4::Results the
> query string returns a null. I assume there is some slight difference
> between the two file formats? Any help is appreciated.
>
> Jeff
>
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