[Bioperl-l] display sequence alignment

[Kevin Brown]

http://search.cpan.org/~lds/Bio-Graphics-2.00/lib/Bio/Graphics.pm

Kevin Brown
Center for Innovations in Medicine
Biodesign Institute
Arizona State University  

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org 
> [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of 
> Albert Vilella
> Sent: Tuesday, February 16, 2010 9:41 AM
> To: Jessica Sun
> Cc: bioperl-l at lists.open-bio.org
> Subject: Re: [Bioperl-l] display sequence alignment
> 
> I am actually also interested in this :-)
> 
> My requirements are to be able to define an image size, like 1200x800
> pixels, and then have a representation of the alignment produced
> through a script, with the clustalw or nucleotide colour palette like
> in Jalview.
> 
> Anyone?
> 
> On Tue, Feb 16, 2010 at 2:26 PM, Jessica Sun 
> <jessica.sun at gmail.com> wrote:
> > Do any one know how to display protein/peptide alignments 
> in color using
> > bioperl.
> >
> > thx
> >
> > On Mon, Feb 15, 2010 at 9:35 AM, Jessica Sun 
> <jessica.sun at gmail.com> wrote:
> >
> >>
> >>
> >> ---------- Forwarded message ----------
> >> From: Jessica Sun <jessica.sun at gmail.com>
> >> Date: Fri, Feb 12, 2010 at 8:44 PM
> >> Subject: one more question
> >> To: bioperl-l at lists.open-bio.org
> >>
> >>
> >> Does anyone knows how to get genomic(dna) sequences(with 
> right sub regions)
> >> in gbk format when you only have NM_(mRNA) accession numbers.
> >>
> >> Thanks,
> >>
> >>
> >> --
> >> Jessica Jingping Sun
> >>
> >>
> >>
> >> --
> >> Jessica Jingping Sun
> >>
> >
> >
> >
> > --
> > Jessica Jingping Sun
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
> >
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