[Bioperl-l] display sequence alignment

[Chris Fields]

How about something like this:

http://www.bioperl.org/wiki/Simple_graphical_alignment_overview

chris

On Feb 16, 2010, at 10:41 AM, Albert Vilella wrote:

> I am actually also interested in this :-)
> 
> My requirements are to be able to define an image size, like 1200x800
> pixels, and then have a representation of the alignment produced
> through a script, with the clustalw or nucleotide colour palette like
> in Jalview.
> 
> Anyone?
> 
> On Tue, Feb 16, 2010 at 2:26 PM, Jessica Sun <jessica.sun at gmail.com> wrote:
>> Do any one know how to display protein/peptide alignments in color using
>> bioperl.
>> 
>> thx
>> 
>> On Mon, Feb 15, 2010 at 9:35 AM, Jessica Sun <jessica.sun at gmail.com> wrote:
>> 
>>> 
>>> 
>>> ---------- Forwarded message ----------
>>> From: Jessica Sun <jessica.sun at gmail.com>
>>> Date: Fri, Feb 12, 2010 at 8:44 PM
>>> Subject: one more question
>>> To: bioperl-l at lists.open-bio.org
>>> 
>>> 
>>> Does anyone knows how to get genomic(dna) sequences(with right sub regions)
>>> in gbk format when you only have NM_(mRNA) accession numbers.
>>> 
>>> Thanks,
>>> 
>>> 
>>> --
>>> Jessica Jingping Sun
>>> 
>>> 
>>> 
>>> --
>>> Jessica Jingping Sun
>>> 
>> 
>> 
>> 
>> --
>> Jessica Jingping Sun
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l at lists.open-bio.org
>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>> 
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l