[Bioperl-l] Bio::seqFeature functions coresponding to specific gBrowse variables
Fungazid
fungazid at yahoo.com
Sat Feb 6 18:36:57 EST 2010
Hello everybody,
thanks for you help, here is another small question, and I would be grateful for your help:
In the gBrowse .conf file of gBrowse I have the following lines
-------------------------------------------------------------------
balloon hover = =<h2>Gene</h2>
balloon click =
<a href='http://localhost/cgi-bin/gbrowse_details/gBrowseTest4?name=$name;class=Sequence;ref=$ref;start=$start;end=$end;feature_id=$id'>gene regions</a><br>
---------------------------------------------------------------------
As you can see above, gBrowse recognizes the properties $name,$ref, $start, $end, $id
Now, lets say I wrote this:
---------------------------
balloon click = sub { my $feature = shift;
$name = $feature->?????();
$ref = $feature->?????();
...
}
---------------------------
what are the seqFeature parallel functions/variables ?
Avi
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