[Bioperl-l] get a full taxonomy path from Bio::Taxon
Ross KK Leung
ross at cuhk.edu.hk
Sat Feb 6 06:09:27 EST 2010
In 2003, there's an old post asking about a way to get a full taxonomy.
http://osdir.com/ml/lang.perl.bio.general/2003-08/msg00206.html
Then Bio::Taxonomy is deprecated and now combination with Bio::Tree has to
use in order to work out the story.
In
http://search.cpan.org/dist/bioperl/Bio/Taxon.pm
it also gives an example by explicitly stating what to retrieve. However,
what I need is to just provide a GI or accession number and to get a full
taxonomy and I find there is no simple way (at least I don't know .) to do
so. Would anybody advise?
Thanks a lot,
Ross
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