[Bioperl-l] Why I can't find the perl script "load_seqdatabase.pl" when use biosql database?

Hilmar Lapp hlapp at drycafe.net
Thu Aug 19 11:30:26 EDT 2010


It's not deprecated. Unless I'm again mixing up something?

	-hilmar

On Aug 19, 2010, at 11:00 AM, Michael Muratet wrote:

>
> On Aug 19, 2010, at 9:53 AM, Hilmar Lapp wrote:
>
>> The file comes with Bioperl-db, not BioSQL. That is so because it  
>> depends on BioPerl and on Bioperl-db, and so you will need to have  
>> both installed.
>
> Is load_seqdatabase.pl still the best method? I vaguely remember a  
> post that said that load_seqdatabase was deprecated, but I can't  
> find it in the archives.
>
> Mike
>
>>
>> 	-hilmar
>>
>> On Aug 19, 2010, at 4:02 AM, xupeng wrote:
>>
>>> 	I've downloaded the biosql-1.0.1.tar.gz. It works well. But I
>>> can't find the 'load_seqdatabase.pl' when I try to import the
>>> Genbank files into biosql databsase.
>>> 	Can anyone give me a copy of that file?
>>> many thanks !
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>>
>> -- 
>> ===========================================================
>> : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net :
>> ===========================================================
>>
>>
>>
>>
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>
> Michael Muratet, Ph.D.
> Senior Scientist
> HudsonAlpha Institute for Biotechnology
> mmuratet at hudsonalpha.org
> (256) 327-0473 (p)
> (256) 327-0966 (f)
>
> Room 4005
> 601 Genome Way
> Huntsville, Alabama 35806
>
>
>
>
>

-- 
===========================================================
: Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net :
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