[Bioperl-l] question about Bio::Tools::Run::StandAloneBlast
Chris Fields
cjfields at illinois.edu
Wed Apr 14 09:16:43 EDT 2010
I'm assuming that we will slowly be deprecating use of those modules as users migrate over to BLAST+. I'm not sure, but I don't think NCBI will support legacy BLAST that much longer.
chris
On Apr 14, 2010, at 8:03 AM, Dave Messina wrote:
> Hi Dimitar,
>
>> May be the problem is that i am using BLAST+ package where theres no 'blastall' at all and 'tblastn' and all programs are standalone.
>
> That's exactly the problem.
>
> This is what you're looking for:
> http://www.bioperl.org/wiki/HOWTO:BlastPlus
>
>
> Dave
>
>
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